Gene: Potri.005G000100
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.005G000100
- Transcript Identifier Potri.005G000100.2
- Gene Type Coding gene
- Location Chr05 : 98023-103851 : negative
Gene Family Information
- ID HOM05D000032
- #Genes/#Species 5307/100
- Phylogenetic origin
- ID ORTHO05D004701
- #Genes/#Species 173/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- id Potri.005G000100.v4.1
- pacid 42802451
- synonym POPTR_0005s00200
Descriptions
- Description PF00098//PF00271//PF04851//PF08152 - Zinc knuckle (zf-CCHC) // Helicase conserved C-terminal domain (Helicase_C) // Type III restriction enzyme, res subunit (ResIII) // GUCT (NUC152) domain (GUCT)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003723 | IEA | InterPro | RNA binding | |
| GO:0004386 | IEA | InterPro | helicase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR001650 | Helicase, C-terminal |
| IPR001878 | Zinc finger, CCHC-type |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR012562 | GUCT |
| Mapman id | Description |
|---|---|
| 16.11.4.1.1.5 | RNA processing.organelle machinery.pre-mRNA splicing.plastidial RNA splicing.group-II intron splicing.basal splicing factor (RH3) |