Gene: Potri.003G058300

General Information

Structural Information

Species Populus trichocarpa
Gene Identifier Potri.003G058300
Transcript Identifier Potri.003G058300.1
Gene Type Coding gene
Location Chr03 : 8521603-8523639 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D001705
#Genes/#Species 367/90
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

id Potri.003G058300.v4.1
pacid 42787413

Descriptions

Short descriptions
Ortholog descriptions

Description PF01535//PF14432 - PPR repeat (PPR) // DYW family of nucleic acid deaminases (DYW_deaminase)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT2G15690

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT2G15690

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT2G15690
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT2G15690

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR002885	Pentatricopeptide repeat
IPR032867	DYW domain

Mapman id	Description
16.11.3.3.4.18	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (DYW2)
16.11.3.3.4.6	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (MEF8-group)