Gene: PGSC0003DMG402006783
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG402006783
- Transcript Identifier PGSC0003DMT400017455
- Gene Type Coding gene
- Location ST4.03ch01 : 65130438-65131933 : positive
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D009836
- #Genes/#Species 89/63
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pacid 37435331
- id PGSC0003DMG402006783.v4.03
- uniprot M1A8Y7
Descriptions
- Description RNA polymerase sigma subunit SigD
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | GOA Database | DNA-templated transcription, initiation | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:2000142 | IEA | GOA Database | regulation of DNA-templated transcription, initiation | |
| GO:0071482 | IEA | GOA Database | cellular response to light stimulus | |
| GO:2001141 | IEA | GOA Database | regulation of RNA biosynthetic process |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016987 | IEA | GOA Database | sigma factor activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| IPR000943 | RNA polymerase sigma-70 |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |