Gene: PGSC0003DMG400033639

General Information

Structural Information

Species Solanum tuberosum
Gene Identifier PGSC0003DMG400033639
Transcript Identifier PGSC0003DMT400083878
Gene Type Coding gene
Location ST4.03ch12 : 51855477-51863388 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000032
#Genes/#Species 5307/100
Phylogenetic origin

ID ORTHO05D002561
#Genes/#Species 279/98
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

pacid 37448694
id PGSC0003DMG400033639.v4.03
uniprot M1D796

Descriptions

Short descriptions
Ortholog descriptions

Description Ethylene-responsive RNA helicase

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0016070	ISO	PLAZA Integrative Orthology	RNA metabolic process	Solyc12g044860.3

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	GOA Database	nucleic acid binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	GOA Database	ATP binding
GO:0005524	IEA	InterPro	ATP binding
GO:0000166	IEA	GOA Database	nucleotide binding
GO:0016787	IEA	GOA Database	hydrolase activity
GO:0004386	IEA	GOA Database	helicase activity
GO:0003724	IBA IEA	GOA Database	RNA helicase activity
GO:0003723	IBA	GOA Database	RNA binding

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:1990904	IBA	GOA Database	ribonucleoprotein complex
GO:0005634	IBA	GOA Database	nucleus
GO:0005737	IBA	GOA Database	cytoplasm
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G55150

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR001650	Helicase, C-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain

Mapman id	Description
16.2.1.1.4	RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing regulator (DDX5)