Gene: PGSC0003DMG400011259
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400011259
- Transcript Identifier PGSC0003DMT400029301
- Gene Type Coding gene
- Location ST4.03ch10 : 314507-336379 : negative
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pacid 37476979
- id PGSC0003DMG400011259.v4.03
- uniprot M1ASJ7
Descriptions
- Description Endoribonuclease Dicer homolog
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009944 | ISO | PLAZA Integrative Orthology | polarity specification of adaxial/abaxial axis | Os04g0509300 |
| GO:0035196 | IEA | GOA Database | production of miRNAs involved in gene silencing by miRNA | |
| GO:0010492 | ISO | PLAZA Integrative Orthology | maintenance of shoot apical meristem identity | Os04g0509300 |
| GO:0010098 | ISO | PLAZA Integrative Orthology | suspensor development | AT1G01040 |
| GO:0048608 | ISO | PLAZA Integrative Orthology | reproductive structure development | Os04g0509300 |
| GO:0031053 | ISO | PLAZA Integrative Orthology | primary miRNA processing | AT1G01040 |
| GO:0007275 | ISO | PLAZA Integrative Orthology | multicellular organism development | Os03g0121800 |
| GO:0009880 | ISO | PLAZA Integrative Orthology | embryonic pattern specification | AT1G01040 |
| GO:0010050 | ISO | PLAZA Integrative Orthology | vegetative phase change | AT5G20320 |
| GO:0000911 | ISO | PLAZA Integrative Orthology | cytokinesis by cell plate formation | AT1G01040 |
| GO:0048317 | ISO | PLAZA Integrative Orthology | seed morphogenesis | AT1G01040 |
| GO:0006353 | ISO | PLAZA Integrative Orthology | DNA-templated transcription, termination | AT5G20320 |
| GO:0030422 | IBA | GOA Database | production of siRNA involved in RNA interference | |
| GO:0051214 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immunity against RNA virus | AT5G20320 |
| GO:0009616 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immune response | AT5G20320 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT1G01040 |
| GO:0010599 | ISO | PLAZA Integrative Orthology | production of lsiRNA involved in RNA interference | AT5G20320 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT5G20320 |
| GO:2000034 | ISO | PLAZA Integrative Orthology | regulation of seed maturation | AT1G01040 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT1G01040 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | AT5G20320 |
| GO:0035279 | ISO | PLAZA Integrative Orthology | mRNA cleavage involved in gene silencing by miRNA | AT1G01040 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT5G20320 |
| GO:0006396 | IEA | GOA Database | RNA processing | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
| GO:0090501 | IEA | GOA Database | RNA phosphodiester bond hydrolysis | |
| GO:0090502 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, endonucleolytic | |
| GO:0031047 | IEA | GOA Database | gene silencing by RNA |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT3G43920 |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0016787 | IEA | InterPro | hydrolase activity | |
| GO:0004525 | IBA IEA | GOA Database | ribonuclease III activity | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity | |
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0016891 | IEA | GOA Database | endoribonuclease activity, producing 5'-phosphomonoesters |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT3G43920 |
| GO:0010445 | ISO | PLAZA Integrative Orthology | nuclear dicing body | AT1G01040 |
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036085 | PAZ domain superfamily |
| IPR003100 | PAZ domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR006935 | Helicase/UvrB, N-terminal |
| IPR000999 | Ribonuclease III domain |
| IPR001650 | Helicase, C-terminal |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR014720 | Double-stranded RNA-binding domain |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 16.9.2.1.1 | RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.endoribonuclease component DCL1 |