Gene: PGSC0003DMG400003408

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400003408
  • Transcript Identifier PGSC0003DMT400008770
  • Gene Type Coding gene
  • Location ST4.03ch10 : 45383143-45388918 : positive

Gene Family Information

  • ID HOM05D002898
  • #Genes/#Species 238/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37479913
  • id PGSC0003DMG400003408.v4.03
  • uniprot M0ZV25

Descriptions

  • Description Squalene synthase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016126
ISO
PLAZA Integrative Orthologysterol biosynthetic process AT4G34640
GO:0045338
IBA
GOA Databasefarnesyl diphosphate metabolic process
GO:0008610
IEA
GOA Databaselipid biosynthetic process
GO:0008610
IEA
InterProlipid biosynthetic process
GO:0009058
IEA
GOA Databasebiosynthetic process
GO:0009058
IEA
InterProbiosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004311
IEA
GOA Databasefarnesyltranstransferase activity
GO:0004311
IEA
InterProfarnesyltranstransferase activity
GO:0051996
IBA
IEA
GOA Databasesqualene synthase activity
GO:0004310
IBA
IEA
GOA Databasefarnesyl-diphosphate farnesyltransferase activity
GO:0004310
IEA
InterProfarnesyl-diphosphate farnesyltransferase activity
GO:0016765
IEA
GOA Databasetransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016740
IEA
InterProtransferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT4G34640
GO:0005783
ISO
PLAZA Integrative Orthologyendoplasmic reticulum AT4G34640
GO:0005789
IBA
GOA Databaseendoplasmic reticulum membrane
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044844 Trans-isoprenyl diphosphate synthases, eukaryotic-type
IPR006449 Squalene synthase-like
IPR033904 Trans-isoprenyl diphosphate synthases, head-to-head
IPR002060 Squalene/phytoene synthase
IPR008949 Isoprenoid synthase domain superfamily
Mapman id Description
9.1.5.1 Secondary metabolism.terpenoids.cycloartenol biosynthesis.squalene synthase