Gene: PGR142G3311

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR142G3311
  • Transcript Identifier PGR142G3311.01
  • Gene Type Coding gene
  • Location NC_045128.1 : 32806567-32809976 : positive

Gene Family Information

  • ID HOM05D000544
  • #Genes/#Species 1005/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031380024.1
  • name LOC116195175
  • name XM_031524164.1
  • id gene-LOC116195175
  • uniprot A0A6P8CH38

Descriptions

  • product PHD finger protein ALFIN-LIKE 1, transcript variant X2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042393
IEA
GOA Databasehistone binding
GO:0042393
IEA
InterProhistone binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0035064
ISO
PLAZA Integrative Orthologymethylated histone binding AT5G05610
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G05610

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G11200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019787 Zinc finger, PHD-finger
IPR045104 Alfin
IPR001965 Zinc finger, PHD-type
IPR011011 Zinc finger, FYVE/PHD-type
IPR044104 Alfin1-like, PHD finger
IPR021998 Alfin, N-terminal
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
12.3.6.2.2 Chromatin organisation.post-translational histone modification.PRC1 bifunctional histone ubiquitination and methylation reader complex.associated factors.methylation reader (Alfin)