Gene: PGR083G2619

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR083G2619
  • Transcript Identifier PGR083G2619.01
  • Gene Type Coding gene
  • Location NC_045133.1 : 27451631-27452635 : positive

Gene Family Information

  • ID HOM05D001117
  • #Genes/#Species 550/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031405113.1
  • name LOC116214036
  • name XM_031549253.1
  • id gene-LOC116214036
  • uniprot A0A6P8EHX8

Descriptions

  • product nonsense-mediated mRNA decay protein 2-like, transcript variant X1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT5G54470
GO:0010224
ISO
PLAZA Integrative Orthologyresponse to UV-B AT3G21890
GO:0010100
ISO
PLAZA Integrative Orthologynegative regulation of photomorphogenesis AT4G27310
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT4G27310
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT3G21890
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT3G21890
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT5G54470
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT3G21890
GO:0090351
ISO
PLAZA Integrative Orthologyseedling development AT4G27310

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030674
ISO
PLAZA Integrative Orthologyprotein-macromolecule adaptor activity AT4G15248
GO:0061629
ISO
PLAZA Integrative OrthologyRNA polymerase II-specific DNA-binding transcription factor binding AT4G27310
GO:0003712
ISO
PLAZA Integrative Orthologytranscription coregulator activity AT4G27310
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT4G27310
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0008270
IEA
InterProzinc ion binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT3G21890

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G27310

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000315 B-box-type zinc finger
Mapman id Description
35.1 not assigned.annotated