Gene: PGR083G2247
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR083G2247
- Transcript Identifier PGR083G2247.01
- Gene Type Coding gene
- Location NC_045133.1 : 26459753-26462209 : negative
Gene Family Information
- ID HOM05D002795
- #Genes/#Species 248/99
- Phylogenetic origin
- ID ORTHO05D003219
- #Genes/#Species 237/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pid XP_031405813.1
- name LOC116214566
- name XM_031549953.1
- id gene-LOC116214566
- uniprot A0A6P8EJH3
Descriptions
- product DNA topoisomerase 1 beta-like
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048439 | ISO | PLAZA Integrative Orthology | flower morphogenesis | AT5G55300 |
| GO:0009965 | ISO | PLAZA Integrative Orthology | leaf morphogenesis | AT5G55300 |
| GO:1905393 | ISO | PLAZA Integrative Orthology | plant organ formation | AT5G55300 |
| GO:0009933 | ISO | PLAZA Integrative Orthology | meristem structural organization | AT5G55300 |
| GO:0010016 | ISO | PLAZA Integrative Orthology | shoot system morphogenesis | AT5G55300 |
| GO:0009791 | ISO | PLAZA Integrative Orthology | post-embryonic development | AT5G55300 |
| GO:0009793 | ISO | PLAZA Integrative Orthology | embryo development ending in seed dormancy | AT5G55300 |
| GO:0006338 | ISO | PLAZA Integrative Orthology | chromatin remodeling | AT5G55300 |
| GO:0019827 | ISO | PLAZA Integrative Orthology | stem cell population maintenance | AT5G55300 |
| GO:0010075 | ISO | PLAZA Integrative Orthology | regulation of meristem growth | AT5G55300 |
| GO:0006265 | IEA | GOA Database | DNA topological change | |
| GO:0006265 | IEA | InterPro | DNA topological change |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G55300 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003917 | IEA | GOA Database | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0003917 | IEA | InterPro | DNA topoisomerase type I (single strand cut, ATP-independent) activity | |
| GO:0016853 | IEA | GOA Database | isomerase activity | |
| GO:0003916 | IEA | GOA Database | DNA topoisomerase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G55300 |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0005694 | IEA | InterPro | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR014711 | DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type |
| IPR001631 | DNA topoisomerase I |
| IPR011010 | DNA breaking-rejoining enzyme, catalytic core |
| IPR013030 | DNA topoisomerase I, DNA binding, N-terminal domain 2 |
| IPR036202 | DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily |
| IPR008336 | DNA topoisomerase I, DNA binding, eukaryotic-type |
| IPR013499 | DNA topoisomerase I, eukaryotic-type |
| IPR013500 | DNA topoisomerase I, catalytic core, eukaryotic-type |
| Mapman id | Description |
|---|---|
| 13.2.1.5 | Cell cycle organisation.DNA replication.preinitiation.DNA topoisomerase (TOP1) |