Gene: PGR031G2003
General Information
Structural Information
- Species Punica granatum
- Gene Identifier PGR031G2003
- Transcript Identifier PGR031G2003.03
- Gene Type Coding gene
- Location NC_045127.1 : 16995362-17000539 : negative
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D009517
- #Genes/#Species 100/82
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- pid XP_031382748.1
- name LOC116196919
- name XM_031526888.1
- id gene-LOC116196919
- uniprot A0A6P8CSG6
Descriptions
- product RNA polymerase sigma factor sigC-like, transcript variant X3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | GOA Database | DNA-templated transcription, initiation | |
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:2000142 | IEA | GOA Database | regulation of DNA-templated transcription, initiation | |
| GO:0071482 | ISO | PLAZA Integrative Orthology | cellular response to light stimulus | AT3G53920 |
| GO:2001141 | ISO | PLAZA Integrative Orthology | regulation of RNA biosynthetic process | AT3G53920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | GOA Database | DNA-binding transcription factor activity | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0016987 | IEA | GOA Database | sigma factor activity | |
| GO:0003899 | ISO | PLAZA Integrative Orthology | DNA-directed 5'-3' RNA polymerase activity | AT3G53920 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT3G53920 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G53920 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR000943 | RNA polymerase sigma-70 |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |