Gene: Os05g0154800

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os05g0154800
  • Transcript Identifier Os05t0154800-01
  • Gene Type Coding gene
  • Location chr05 : 3210716-3213832 : positive

Gene Family Information

  • ID HOM05D002411
  • #Genes/#Species 281/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os05t0154800-01
  • MSU-ID LOC_Os05g06280.2
  • MSU-ID LOC_Os05g06280.1
  • uniprot Q0DKM4

Descriptions

  • Description Similar to U1snRNP-specific protein, U1A.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT2G47580

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0030619
IBA
GOA DatabaseU1 snRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005730
IEA
GOA Databasenucleolus
GO:0005681
IEA
GOA Databasespliceosomal complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005685
ISS, IBA
GOA DatabaseU1 snRNP
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G47580

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
16.2.1.1.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).protein factor (U1A)