Gene: Nitab4.5_0007787g0010

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0007787g0010
  • Transcript Identifier Nitab4.5_0007787g0010.1
  • Gene Type Coding gene
  • Location Nitab4.5_0007787 : 65705-69063 : positive

Gene Family Information

  • ID HOM05D001257
  • #Genes/#Species 497/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0007787g0010.1
  • SR1-identifier Nta01g22210.1

Descriptions

  • Description RNA polymerase sigma-70 like domain, RNA polymerase sigma factor, region 3/4, Winged helix-turn-helix DNA-binding domain, RNA polymerase sigma-70 region 1.2, RNA polymerase sigma-70 region 4, RNA polymerase sigma factor, SigB/SigC/SigD, plastid, RNA polymerase sigma-70, RNA polymerase sigma factor, region 2, RNA polymerase sigma-70 region 2, RNA polymerase sigma-70 region 3
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0071482
ISO
PLAZA Integrative Orthologycellular response to light stimulus AT1G08540
GO:2001141
ISO
PLAZA Integrative Orthologyregulation of RNA biosynthetic process AT1G08540
GO:0006399
ISO
PLAZA Integrative OrthologytRNA metabolic process AT1G08540
GO:0009637
ISO
PLAZA Integrative Orthologyresponse to blue light AT1G08540
GO:0009658
ISO
PLAZA Integrative Orthologychloroplast organization AT1G08540
GO:0010114
ISO
PLAZA Integrative Orthologyresponse to red light AT1G08540

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0003677
IEA
InterProDNA binding
GO:0016987
IEA
InterProsigma factor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G08540

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007627 RNA polymerase sigma-70 region 2
IPR013325 RNA polymerase sigma factor, region 2
IPR000943 RNA polymerase sigma-70
IPR007630 RNA polymerase sigma-70 region 4
IPR014284 RNA polymerase sigma-70 like domain
IPR007624 RNA polymerase sigma-70 region 3
IPR013324 RNA polymerase sigma factor, region 3/4-like
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR016262 RNA polymerase sigma factor, SigB/C/D/F, plastid
IPR009042 RNA polymerase sigma-70 region 1.2
Mapman id Description
15.6.2.1 RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma)