Gene: Nitab4.5_0001867g0100
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0001867g0100
- Transcript Identifier Nitab4.5_0001867g0100.1
- Gene Type Coding gene
- Location Nitab4.5_0001867 : 229726-236416 : negative
Gene Family Information
- ID HOM05D001060
- #Genes/#Species 575/98
- Phylogenetic origin
- ID ORTHO05D000905
- #Genes/#Species 561/98
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Nitab4.5_0001867g0100.1
- SR1-identifier Nta17g22790.1
Descriptions
- Description PAS domain, Histidine kinase-like ATPase, ATP-binding domain, PAS fold, GAF domain, Phytochrome chromophore binding site, Phytochrome chromophore attachment domain, Phytochrome, PAS fold-2, Phytochrome, central region, Signal transduction histidine kinase, core
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0009584 | IEA | InterPro | detection of visible light | |
| GO:0018298 | IEA | InterPro | protein-chromophore linkage | |
| GO:0009585 | ISO | PLAZA Homology (enrichment) | red, far-red light phototransduction | HOM05D001060 |
| GO:0007165 | ISO | PLAZA Homology (enrichment) | signal transduction | HOM05D001060 |
| GO:0017006 | ISO | PLAZA Homology (enrichment) | protein-tetrapyrrole linkage | HOM05D001060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0000155 | ISO | PLAZA Homology (enrichment) | phosphorelay sensor kinase activity | HOM05D001060 |
| GO:0042803 | ISO | PLAZA Homology (enrichment) | protein homodimerization activity | HOM05D001060 |
| GO:0009881 | ISO | PLAZA Homology (enrichment) | photoreceptor activity | HOM05D001060 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013515 | Phytochrome, central region |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR035965 | PAS domain superfamily |
| IPR003018 | GAF domain |
| IPR000014 | PAS domain |
| IPR013654 | PAS fold-2 |
| IPR029016 | GAF-like domain superfamily |
| IPR013767 | PAS fold |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR001294 | Phytochrome |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR043150 | Phytochrome, PHY domain |
| Mapman id | Description |
|---|---|
| 26.1.1.1 | External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY) |