Gene: Lsat_1_v5_gn_8_102240

General Information

Structural Information

Species Lactuca sativa
Gene Identifier Lsat_1_v5_gn_8_102240
Transcript Identifier Lsat_1_v5_gn_8_102240.1
Gene Type Coding gene
Location Lsat_1_v8_lg_8 : 151502749-151505373 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000001
#Genes/#Species 35287/100
Phylogenetic origin

ID ORTHO05D000003
#Genes/#Species 15137/100
Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

id Lsat_1_v5_gn_8_102240.v5
pacid 38952128

Descriptions

Short descriptions
Ortholog descriptions

Description PF01535//PF13041//PF14432 - PPR repeat (PPR) // PPR repeat family (PPR_2) // DYW family of nucleic acid deaminases (DYW_deaminase)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0031425	ISO	PLAZA Integrative Orthology	chloroplast RNA processing	AT3G57430

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0008270	IEA	InterPro	zinc ion binding
GO:0005515	IEA	InterPro	protein binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT3G57430

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G57430

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR032867	DYW domain
IPR002885	Pentatricopeptide repeat
IPR011990	Tetratricopeptide-like helical domain superfamily

Mapman id	Description
16.11.3.3.4.49	RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (OTP84)