Gene: Lsat_1_v5_gn_1_76121

General Information

Structural Information

  • Species Lactuca sativa
  • Gene Identifier Lsat_1_v5_gn_1_76121
  • Transcript Identifier Lsat_1_v5_gn_1_76121.1
  • Gene Type Coding gene
  • Location Lsat_1_v8_lg_1 : 91046308-91047046 : positive

Gene Family Information

  • ID HOM05D002795
  • #Genes/#Species 248/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lsat_1_v5_gn_1_76121.v5
  • pacid 38948728

Descriptions

  • Description PF01028//PF02919 - Eukaryotic DNA topoisomerase I, catalytic core (Topoisom_I) // Eukaryotic DNA topoisomerase I, DNA binding fragment (Topoisom_I_N)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006265
IEA
InterProDNA topological change
GO:0010075
ISO
PLAZA Integrative Orthologyregulation of meristem growth AT5G55300
GO:0019827
ISO
PLAZA Integrative Orthologystem cell population maintenance AT5G55300
GO:0006338
ISO
PLAZA Integrative Orthologychromatin remodeling AT5G55300
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT5G55300
GO:0009791
ISO
PLAZA Integrative Orthologypost-embryonic development AT5G55300
GO:0010016
ISO
PLAZA Integrative Orthologyshoot system morphogenesis AT5G55300
GO:0009933
ISO
PLAZA Integrative Orthologymeristem structural organization AT5G55300
GO:1905393
ISO
PLAZA Integrative Orthologyplant organ formation AT5G55300
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT5G55300
GO:0048439
ISO
PLAZA Integrative Orthologyflower morphogenesis AT5G55300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003917
IEA
InterProDNA topoisomerase type I (single strand cut, ATP-independent) activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G55300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
IEA
InterProchromosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G55300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013030 DNA topoisomerase I, DNA binding, N-terminal domain 2
IPR036202 DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily
IPR011010 DNA breaking-rejoining enzyme, catalytic core
IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily
IPR013499 DNA topoisomerase I, eukaryotic-type
IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type
IPR008336 DNA topoisomerase I, DNA binding, eukaryotic-type
Mapman id Description
19.4.1.4 Protein homeostasis.proteolysis.cysteine-type peptidase activities.C15-class pyrrolidone-carboxylate peptidase