Gene: Cre01.g028200

General Information

Structural Information

  • Species Chlamydomonas reinhardtii
  • Gene Identifier Cre01.g028200
  • Transcript Identifier Cre01.g028200.t1.1
  • Gene Type Coding gene
  • Location chromosome_1 : 4221707-4225995 : negative

Gene Family Information

  • ID HOM05D000032
  • #Genes/#Species 5307/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Cre01.g028200.v5.5
  • pacid 30789461
  • alias g644.t2

Descriptions

  • Description DEAD-box RNA helicase
  • Description Homology to Saccharomyces cerevisiae Dbp2p: essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing. Previously annotated as DBP2 after the yeast protein, but there is no DBP1 in t
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process Solyc03g112350.4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0003724
ISO
PLAZA Integrative OrthologyRNA helicase activity Solyc03g112350.4
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G63120

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G55150

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
16.2.1.1.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U1 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing regulator (DDX5)