Gene: Cfa003721
General Information
Structural Information
- Species Carpinus fangiana
- Gene Identifier Cfa003721
- Transcript Identifier Cfa003721.t1
- Gene Type Coding gene
- Location Cfa01 : 53747030-53759328 : positive
Gene Family Information
- ID HOM05D000399
- #Genes/#Species 1254/98
- Phylogenetic origin
- ID ORTHO05D000304
- #Genes/#Species 1156/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Cfa003721.t1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000911 | ISO | PLAZA Integrative Orthology | cytokinesis by cell plate formation | AT1G01040 |
| GO:0010267 | ISO | PLAZA Integrative Orthology | production of ta-siRNAs involved in RNA interference | AT1G01040 |
| GO:0035279 | ISO | PLAZA Integrative Orthology | mRNA cleavage involved in gene silencing by miRNA | AT1G01040 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT1G01040 |
| GO:2000034 | ISO | PLAZA Integrative Orthology | regulation of seed maturation | AT1G01040 |
| GO:0010599 | ISO | PLAZA Integrative Orthology | production of lsiRNA involved in RNA interference | AT1G01040 |
| GO:0009908 | ISO | PLAZA Integrative Orthology | flower development | AT1G01040 |
| GO:0009616 | ISO | PLAZA Integrative Orthology | RNAi-mediated antiviral immune response | AT1G01040 |
| GO:0048317 | ISO | PLAZA Integrative Orthology | seed morphogenesis | AT1G01040 |
| GO:0009880 | ISO | PLAZA Integrative Orthology | embryonic pattern specification | AT1G01040 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT1G01040 |
| GO:0007275 | ISO | PLAZA Integrative Orthology | multicellular organism development | Os03g0121800 |
| GO:0031053 | ISO | PLAZA Integrative Orthology | primary miRNA processing | AT1G01040 |
| GO:0010098 | ISO | PLAZA Integrative Orthology | suspensor development | AT1G01040 |
| GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003725 | ISO | PLAZA Integrative Orthology | double-stranded RNA binding | AT1G01040 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0016787 | IEA | InterPro | hydrolase activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0004525 | IEA | InterPro | ribonuclease III activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010445 | ISO | PLAZA Integrative Orthology | nuclear dicing body | AT1G01040 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G01040 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003100 | PAZ domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR038248 | Dicer dimerisation domain superfamily |
| IPR000999 | Ribonuclease III domain |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR014720 | Double-stranded RNA-binding domain |
| IPR001650 | Helicase, C-terminal |
| IPR036389 | Ribonuclease III, endonuclease domain superfamily |
| IPR036085 | PAZ domain superfamily |
| IPR006935 | Helicase/UvrB, N-terminal |
| Mapman id | Description |
|---|---|
| 16.9.2.1.1 | RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.endoribonuclease component DCL1 |