Gene: Cc11_g01100
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc11_g01100
- Transcript Identifier Cc11_g01100.1
- Gene Type Coding gene
- Location chr11 : 3918565-3930165 : negative
Gene Family Information
- ID HOM05D000515
- #Genes/#Species 1048/100
- Phylogenetic origin
- ID ORTHO05D001911
- #Genes/#Species 338/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB F6HVZ2
- UniProtKB O60177
- UniProtKB B9HG87
- UniProtKB B9RGI1
- UniProtKB Q9FNI6
- UniProtKB Q9FIY7
- id GSCOCG00019639001
Descriptions
- Description Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0080188 | ISO | PLAZA Integrative Orthology | gene silencing by RNA-directed DNA methylation | AT3G20010 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0070615 | IEA | InterPro | nucleosome-dependent ATPase activity | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G20010 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000330 | SNF2, N-terminal |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR001650 | Helicase, C-terminal |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR038718 | SNF2-like, N-terminal domain superfamily |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 12.4.8.3.3 | Chromatin organisation.nucleosome remodeling.other chromatin remodeling activities.Rad5/16-like group.chromatin remodeling factor (Ris1) |