Gene: Cc09_g06460
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc09_g06460
- Transcript Identifier Cc09_g06460.1
- Gene Type Coding gene
- Location chr9 : 7391811-7393607 : positive
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- UniProtKB Q9XJ60
- UniProtKB E9JTV4
- UniProtKB O64645
- UniProtKB O82743
- UniProtKB A5A3Z8
- UniProtKB E9JTV5
- id GSCOCG00005094001
Descriptions
- Description Putative MADS-box protein SOC1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | ISO | PLAZA Homology (enrichment) | positive regulation of transcription by RNA polymerase II | HOM05D000042 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | ISO | PLAZA Homology (enrichment) | DNA binding | HOM05D000042 |
| GO:0000977 | ISO | PLAZA Homology (enrichment) | RNA polymerase II transcription regulatory region sequence-specific DNA binding | HOM05D000042 |
| GO:0046983 | ISO | PLAZA Homology (enrichment) | protein dimerization activity | HOM05D000042 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002487 | Transcription factor, K-box |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |