Gene: Cc00_g07710
General Information
Structural Information
- Species Coffea canephora
- Gene Identifier Cc00_g07710
- Transcript Identifier Cc00_g07710.1
- Gene Type Coding gene
- Location chr0 : 62550245-62557822 : positive
Gene Family Information
- ID HOM05D001060
- #Genes/#Species 575/98
- Phylogenetic origin
- ID ORTHO05D000905
- #Genes/#Species 561/98
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- UniProtKB Q10CQ8
- UniProtKB B9U4G8
- UniProtKB F6HHP7
- UniProtKB P93528
- UniProtKB A2XM23
- UniProtKB B9U4G4
- id GSCOCG00009775001
Descriptions
- Description Phytochrome C
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0007165 | IEA | InterPro | signal transduction | |
| GO:0009584 | IEA | InterPro | detection of visible light | |
| GO:0018298 | IEA | InterPro | protein-chromophore linkage | |
| GO:0009903 | ISO | PLAZA Integrative Orthology | chloroplast avoidance movement | Pp3c25_2610 |
| GO:0009585 | ISO | PLAZA Homology (enrichment) | red, far-red light phototransduction | HOM05D001060 |
| GO:0017006 | ISO | PLAZA Homology (enrichment) | protein-tetrapyrrole linkage | HOM05D001060 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000155 | IEA | InterPro | phosphorelay sensor kinase activity | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0042803 | ISO | PLAZA Homology (enrichment) | protein homodimerization activity | HOM05D001060 |
| GO:0009881 | ISO | PLAZA Homology (enrichment) | photoreceptor activity | HOM05D001060 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | Pp3c25_2610 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029016 | GAF-like domain superfamily |
| IPR013767 | PAS fold |
| IPR000014 | PAS domain |
| IPR044767 | Phytochrome A/B/C/D/E-like, histidine-kinase-related domain |
| IPR035965 | PAS domain superfamily |
| IPR003594 | Histidine kinase/HSP90-like ATPase |
| IPR003661 | Signal transduction histidine kinase, dimerisation/phosphoacceptor domain |
| IPR036890 | Histidine kinase/HSP90-like ATPase superfamily |
| IPR013515 | Phytochrome, central region |
| IPR043150 | Phytochrome, PHY domain |
| IPR003018 | GAF domain |
| IPR013654 | PAS fold-2 |
| IPR001294 | Phytochrome |
| Mapman id | Description |
|---|---|
| 26.1.1.1 | External stimuli response.light.red/far red light.phytochrome photoreceptor (PHY) |