Gene: Carub.0008s1133

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s1133
  • Transcript Identifier Carub.0008s1133.1
  • Gene Type Coding gene
  • Location scaffold_8 : 6822587-6825007 : negative

Gene Family Information

  • ID HOM05D003145
  • #Genes/#Species 218/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s1133.v1.1
  • pacid 39252144
  • synonym Carubv10025900m.g

Descriptions

  • Description PTHR11208:SF45 - SPLICING FACTOR 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT5G51300
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G51300

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003723
IEA
InterProRNA binding
GO:0008270
IEA
InterProzinc ion binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G51300

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G51300
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G51300
GO:0005654
ISO
PLAZA Integrative Orthologynucleoplasm AT5G51300

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR004087 K Homology domain
IPR045071 KH domain-containing BBP-like
IPR036612 K Homology domain, type 1 superfamily
IPR032570 Splicing factor 1, helix-hairpin domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR001878 Zinc finger, CCHC-type
IPR036875 Zinc finger, CCHC-type superfamily
IPR004088 K Homology domain, type 1
Mapman id Description
16.2.1.2.9 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).pre-mRNA splicing factor (SF1)