Gene: Carub.0008s0692

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0008s0692
  • Transcript Identifier Carub.0008s0692.1
  • Gene Type Coding gene
  • Location scaffold_8 : 3569958-3572441 : negative

Gene Family Information

  • ID HOM05D000181
  • #Genes/#Species 2101/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0008s0692.v1.1
  • pacid 39252134
  • synonym Carubv10025980m.g

Descriptions

  • Description PTHR23076//PTHR23076:SF33 - METALLOPROTEASE M41 FTSH // ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006508
IEA
InterProproteolysis
GO:0030163
ISO
PLAZA Integrative Orthologyprotein catabolic process AT5G42270
GO:0048564
ISO
PLAZA Integrative Orthologyphotosystem I assembly AT5G42270
GO:0010304
ISO
PLAZA Integrative OrthologyPSII associated light-harvesting complex II catabolic process AT5G42270
GO:0010205
ISO
PLAZA Integrative Orthologyphotoinhibition AT5G42270

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005524
IEA
InterProATP binding
GO:0016887
IEA
InterProATP hydrolysis activity
GO:0004176
IEA
InterProATP-dependent peptidase activity
GO:0004222
IEA
InterPrometalloendopeptidase activity
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G42270

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
InterPromembrane
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT5G42270
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT5G42270
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT5G42270
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane AT5G42270
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT5G42270

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003959 ATPase, AAA-type, core
IPR037219 Peptidase M41-like
IPR000642 Peptidase M41
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR005936 Peptidase, FtsH
IPR003593 AAA+ ATPase domain
IPR041569 AAA ATPase, AAA+ lid domain
Mapman id Description
1.1.1.4.1 Photosynthesis.photophosphorylation.photosystem II.repair and reassembly cycle.protease (FtsH1/5)
19.4.5.8.2.1 Protein homeostasis.proteolysis.metallopeptidase activities.FtsH endopeptidase activities.FtsH plastidial protease complexes.component FtsH1/2/5/6/8