Gene: Carub.0005s2049
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0005s2049
- Transcript Identifier Carub.0005s2049.1
- Gene Type Coding gene
- Location scaffold_5 : 10118592-10121526 : negative
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D009517
- #Genes/#Species 100/82
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0005s2049.v1.1
- pacid 39223747
- synonym Carubv10016920m.g
Descriptions
- Description PTHR30603//PTHR30603:SF13 - RNA POLYMERASE SIGMA FACTOR RPO // RNA POLYMERASE SIGMA FACTOR SIGC
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0071482 | ISO | PLAZA Integrative Orthology | cellular response to light stimulus | AT3G53920 |
| GO:2001141 | ISO | PLAZA Integrative Orthology | regulation of RNA biosynthetic process | AT3G53920 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0016987 | ISO | PLAZA Integrative Orthology | sigma factor activity | AT3G53920 |
| GO:0003899 | ISO | PLAZA Integrative Orthology | DNA-directed 5'-3' RNA polymerase activity | AT3G53920 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT3G53920 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G53920 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| IPR000943 | RNA polymerase sigma-70 |
| IPR016262 | RNA polymerase sigma factor, SigB/C/D/F, plastid |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |