Gene: Carub.0003s2693
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s2693
- Transcript Identifier Carub.0003s2693.1
- Gene Type Coding gene
- Location scaffold_3 : 10127016-10131971 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001122
- #Genes/#Species 480/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0003s2693.v1.1
- pacid 39241248
- synonym Carubv10012896m.g
Descriptions
- Description 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT2G05710 |
| GO:0006979 | ISO | PLAZA Integrative Orthology | response to oxidative stress | AT2G05710 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT2G05710 |
| GO:0006102 | ISO | PLAZA Integrative Orthology | isocitrate metabolic process | AT2G05710 |
| GO:0090351 | ISO | PLAZA Integrative Orthology | seedling development | AT2G05710 |
| GO:0006101 | ISO | PLAZA Integrative Orthology | citrate metabolic process | AT2G05710 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | ISO | PLAZA Integrative Orthology | ATP binding | AT2G05710 |
| GO:0005507 | ISO | PLAZA Integrative Orthology | copper ion binding | AT2G05710 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT2G05710 |
| GO:0003994 | ISO | PLAZA Integrative Orthology | aconitate hydratase activity | AT2G05710 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G05710 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT2G05710 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT2G05710 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT2G05710 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G05710 |
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT2G05710 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT2G05710 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001030 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain |
| IPR015931 | Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 |
| IPR036008 | Aconitase, iron-sulfur domain |
| IPR006249 | Aconitase/Iron-responsive element-binding protein 2 |
| IPR044137 | Aconitase A, swivel domain |
| IPR015928 | Aconitase/3-isopropylmalate dehydratase, swivel |
| IPR000573 | Aconitase A/isopropylmalate dehydratase small subunit, swivel domain |