Gene: Carub.0003s1614

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0003s1614
  • Transcript Identifier Carub.0003s1614.1
  • Gene Type Coding gene
  • Location scaffold_3 : 5696648-5699253 : positive

Gene Family Information

  • ID HOM05D000956
  • #Genes/#Species 627/88
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0003s1614.v1.1
  • pacid 39240651
  • synonym Carubv10013505m.g

Descriptions

  • Description PF01344//PF01419//PF13415 - Kelch motif (Kelch_1) // Jacalin-like lectin domain (Jacalin) // Galactose oxidase, central domain (Kelch_3)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT1G54040
GO:0019762
ISO
PLAZA Integrative Orthologyglucosinolate catabolic process AT3G16390
GO:0009753
ISO
PLAZA Integrative Orthologyresponse to jasmonic acid AT1G54040
GO:0080027
ISO
PLAZA Integrative Orthologyresponse to herbivore AT3G16400
GO:0080028
ISO
PLAZA Integrative Orthologynitrile biosynthetic process AT3G16390
GO:0042742
ISO
PLAZA Integrative Orthologydefense response to bacterium AT1G54040

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G16400
GO:0030234
ISO
PLAZA Integrative Orthologyenzyme regulator activity AT1G54040

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G54040
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G16390
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G16410

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR015915 Kelch-type beta propeller
IPR033734 Jacalin-like lectin domain, plant
IPR001229 Jacalin-like lectin domain
IPR036404 Jacalin-like lectin domain superfamily
IPR006652 Kelch repeat type 1
Mapman id Description
30.1.2.2 Clade-specific metabolism.Brassicaceae.glucosinolate degradation.nitrilespecifier protein