Gene: Carub.0003s0767
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0003s0767
- Transcript Identifier Carub.0003s0767.1
- Gene Type Coding gene
- Location scaffold_3 : 2636624-2643510 : negative
Gene Family Information
- ID HOM05D001399
- #Genes/#Species 447/95
- Phylogenetic origin
- ID ORTHO05D001670
- #Genes/#Species 372/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0003s0767.v1.1
- pacid 39242634
- synonym Carubv10016475m.g
Descriptions
- Description PF00637//PF09268//PF13838 - Region in Clathrin and VPS (Clathrin) // Clathrin, heavy-chain linker (Clathrin-link) // Clathrin-H-link (Clathrin_H_link)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0006897 | ISO | PLAZA Integrative Orthology | endocytosis | AT3G08530 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005198 | IEA | InterPro | structural molecule activity | |
| GO:0032051 | IEA | InterPro | clathrin light chain binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT3G08530 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G08530 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030130 | IEA | InterPro | clathrin coat of trans-Golgi network vesicle | |
| GO:0030132 | IEA | InterPro | clathrin coat of coated pit | |
| GO:0071439 | IEA | InterPro | clathrin complex | |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT3G08530 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G08530 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G08530 |
| GO:0005794 | ISO | PLAZA Integrative Orthology | Golgi apparatus | AT3G08530 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT3G08530 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR016024 | Armadillo-type fold |
| IPR015348 | Clathrin, heavy chain, linker, core motif |
| IPR016341 | Clathrin, heavy chain |
| IPR000547 | Clathrin, heavy chain/VPS, 7-fold repeat |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR012331 | Clathrin, heavy chain, linker |
| IPR016025 | Clathrin heavy chain, N-terminal |
| Mapman id | Description |
|---|---|
| 22.3.1.1.1 | Vesicle trafficking.post-Golgi trafficking.clathrin coated vesicle (CCV) machinery.clathrin triskelion structure.heavy chain |