Gene: Carub.0002s2396

General Information

Structural Information

  • Species Capsella rubella
  • Gene Identifier Carub.0002s2396
  • Transcript Identifier Carub.0002s2396.1
  • Gene Type Coding gene
  • Location scaffold_2 : 12602776-12606725 : positive

Gene Family Information

  • ID HOM05D000042
  • #Genes/#Species 4894/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Carub.0002s2396.v1.1
  • pacid 39244163
  • synonym Carubv10020979m.g

Descriptions

  • Description PTHR11945:SF221 - SERUM RESPONSE FACTOR
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0048573
ISO
PLAZA Integrative Orthologyphotoperiodism, flowering AT1G77080
GO:0009909
ISO
PLAZA Integrative Orthologyregulation of flower development AT1G77080
GO:0045944
ISO
PLAZA Homology (enrichment)positive regulation of transcription by RNA polymerase II HOM05D000042
GO:0010221
ISO
PLAZA Integrative Orthologynegative regulation of vernalization response AT5G65050
GO:2000028
ISO
PLAZA Integrative Orthologyregulation of photoperiodism, flowering AT5G65060
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G65050
GO:0010048
ISO
PLAZA Integrative Orthologyvernalization response AT5G65050

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0046983
IEA
InterProprotein dimerization activity
GO:0003700
IEA
InterProDNA-binding transcription factor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G77080
GO:0000977
ISO
PLAZA Homology (enrichment)RNA polymerase II transcription regulatory region sequence-specific DNA binding HOM05D000042

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036879 Transcription factor, MADS-box superfamily
IPR002100 Transcription factor, MADS-box
IPR002487 Transcription factor, K-box
Mapman id Description
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL)