Gene: Carub.0002s1201
General Information
Structural Information
- Species Capsella rubella
- Gene Identifier Carub.0002s1201
- Transcript Identifier Carub.0002s1201.1
- Gene Type Coding gene
- Location scaffold_2 : 7693704-7696823 : positive
Gene Family Information
- ID HOM05D001972
- #Genes/#Species 335/98
- Phylogenetic origin
- ID ORTHO05D002555
- #Genes/#Species 279/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id Carub.0002s1201.v1.1
- pacid 39244903
- synonym Carubv10019919m.g
Descriptions
- Description K10638 - E3 ubiquitin-protein ligase UHRF1 [EC:6.3.2.19] (UHRF1, NP95)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010424 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CG sequence | AT5G39550 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT5G39550 |
| GO:0090309 | ISO | PLAZA Integrative Orthology | positive regulation of DNA methylation-dependent heterochromatin assembly | AT5G39550 |
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT5G39550 |
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | AT5G39550 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0004842 | ISO | PLAZA Integrative Orthology | ubiquitin-protein transferase activity | AT5G39550 |
| GO:0010428 | ISO | PLAZA Integrative Orthology | methyl-CpNpG binding | AT5G39550 |
| GO:0010429 | ISO | PLAZA Integrative Orthology | methyl-CpNpN binding | AT5G39550 |
| GO:0008327 | ISO | PLAZA Integrative Orthology | methyl-CpG binding | AT5G39550 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G39550 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR027370 | RING-type zinc-finger, LisH dimerisation motif |
| IPR045134 | UHRF1/2-like |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| IPR003105 | SRA-YDG |
| IPR001965 | Zinc finger, PHD-type |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR036987 | SRA-YDG superfamily |
| IPR015947 | PUA-like superfamily |
| IPR001841 | Zinc finger, RING-type |
| Mapman id | Description |
|---|---|
| 12.5.2.3 | Chromatin organisation.DNA methylation.RNA-independent DNA methylation.regulatory cofactor (ORTH/VIM) |