Gene: CSS0030174
General Information
Structural Information
- Species Camellia sinensis var. sinensis
- Gene Identifier CSS0030174
- Transcript Identifier CSS0030174.1
- Gene Type Coding gene
- Location Chr9 : 163836395-163837343 : negative
Gene Family Information
- ID HOM05D000904
- #Genes/#Species 662/100
- Phylogenetic origin
- ID ORTHO05D001801
- #Genes/#Species 353/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid CSS0030174.1
Descriptions
- Description PREDICTED: splicing factor U2af small subunit B-like [Elaeis guineensis]
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
GO:0048573 | ISO | PLAZA Integrative Orthology | photoperiodism, flowering | AT5G42820 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0046872 | IEA | InterPro | metal ion binding | |
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G42820 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0089701 | IEA | InterPro | U2AF complex | |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G42820 |
GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G27650 |
GO:0005654 | ISO | PLAZA Integrative Orthology | nucleoplasm | AT1G27650 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.2.1.2.11.1 | RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U2 small nuclear ribonucleoprotein particle (snRNP).U2AF pre-RNA splicing auxiliary factor heterodimer.small subunit U2AF1/U2AF35 |