Gene: COL.COLO4_34962
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_34962
- Transcript Identifier COL.rna33652
- Gene Type Coding gene
- Location AWUE01022470.1 : 7535-16788 : negative
Gene Family Information
- ID HOM05D000103
- #Genes/#Species 3100/100
- Phylogenetic origin
- ID ORTHO05D000003
- #Genes/#Species 15137/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna33652
- GenBank OMO57948.1
- id gene34934
- gene_name COLO4_34962
- uniprot A0A1R3GIP0
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016556 | ISO | PLAZA Integrative Orthology | mRNA modification | AT5G55740 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0140359 | ISO | PLAZA Homology (enrichment) | ABC-type transporter activity | HOM05D000103 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G55740 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR029481 | ABC-transporter, N-terminal domain |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR002885 | Pentatricopeptide repeat |
| IPR013525 | ABC-2 type transporter |
| IPR013581 | Plant PDR ABC transporter associated |
| IPR003439 | ABC transporter-like, ATP-binding domain |
| Mapman id | Description |
|---|---|
| 16.11.3.3.4.44 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (CRR21) |
| 24.1.3.2.2 | Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter |