Gene: COL.COLO4_30725

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_30725
  • Transcript Identifier COL.rna29440
  • Gene Type Coding gene
  • Location AWUE01020782.1 : 8869-11205 : negative

Gene Family Information

  • ID HOM05D003045
  • #Genes/#Species 226/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna29440
  • GenBank OMO66134.1
  • id gene30697
  • gene_name COLO4_30725
  • uniprot A0A1R3H720

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0000956
IEA
GOA Databasenuclear-transcribed mRNA catabolic process
GO:0000956
IEA
InterPronuclear-transcribed mRNA catabolic process
GO:0042538
ISO
PLAZA Integrative Orthologyhyperosmotic salinity response AT1G19120
GO:0016070
ISO
PLAZA Integrative OrthologyRNA metabolic process AT1G19120
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT1G19120
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT1G19120

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000339
IEA
GOA DatabaseRNA cap binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G19120

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
IEA
GOA DatabaseP-body
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR034104 Sm-like protein Lsm1
IPR001163 LSM domain, eukaryotic/archaea-type
IPR010920 LSM domain superfamily
IPR044642 U6 snRNA-associated Sm-like protein Lsm1/8
Mapman id Description
16.2.3.1 RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm1