Gene: COL.COLO4_30214

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_30214
  • Transcript Identifier COL.rna28931
  • Gene Type Coding gene
  • Location AWUE01020665.1 : 63000-70328 : positive

Gene Family Information

  • ID HOM05D000890
  • #Genes/#Species 673/80
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna28931
  • GenBank OMO67163.1
  • id gene30186
  • gene_name COLO4_30214
  • uniprot A0A1R3HA72

Descriptions

  • Description Photosynthetic reaction centre, L/M
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0019684
IEA
GOA Databasephotosynthesis, light reaction
GO:0019684
IEA
InterProphotosynthesis, light reaction
GO:0009767
ISO
PLAZA Homology (enrichment)photosynthetic electron transport chain HOM05D000890
GO:0009772
IEA
GOA Databasephotosynthetic electron transport in photosystem II
GO:0009772
IEA
InterProphotosynthetic electron transport in photosystem II
GO:0018298
IEA
GOA Databaseprotein-chromophore linkage
GO:0015979
IEA
GOA Databasephotosynthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding ATCG00280
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding ATCG00280
GO:0045156
IEA
GOA Databaseelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0045156
IEA
InterProelectron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0016168
IEA
GOA Databasechlorophyll binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009535
ISO
PLAZA Integrative Orthologychloroplast thylakoid membrane ATCG00280
GO:0010287
ISO
PLAZA Integrative Orthologyplastoglobule ATCG00280
GO:0009521
ISO
PLAZA Homology (enrichment)photosystem HOM05D000890
GO:0009533
ISO
PLAZA Integrative Orthologychloroplast stromal thylakoid ATCG00280
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid ATCG00280
GO:0009539
ISO
PLAZA Integrative Orthologyphotosystem II reaction center ATCG00280
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast ATCG00280
GO:0016020
IEA
GOA Databasemembrane
GO:0009579
IEA
GOA Databasethylakoid
GO:0016021
IEA
GOA Databaseintegral component of membrane
GO:0009523
IEA
GOA Databasephotosystem II

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036854 Photosystem II protein D1/D2 superfamily
IPR000484 Photosynthetic reaction centre, L/M
Mapman id Description
35.2 not assigned.not annotate