Gene: COL.COLO4_26013
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_26013
- Transcript Identifier COL.rna24744
- Gene Type Coding gene
- Location AWUE01019196.1 : 47685-52589 : negative
Gene Family Information
- ID HOM05D001785
- #Genes/#Species 366/100
- Phylogenetic origin
- ID ORTHO05D001933
- #Genes/#Species 335/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna24744
- GenBank OMO75578.1
- id gene25985
- gene_name COLO4_26013
- uniprot A0A1R3HYZ8
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016192 | IEA | GOA Database | vesicle-mediated transport | |
| GO:0016192 | IEA | InterPro | vesicle-mediated transport | |
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0015031 | IEA | GOA Database | protein transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005198 | IEA | GOA Database | structural molecule activity | |
| GO:0005198 | IEA | InterPro | structural molecule activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030117 | IEA | GOA Database | membrane coat | |
| GO:0030117 | IEA | InterPro | membrane coat | |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G62020 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G21390 |
| GO:0030126 | IEA | GOA Database | COPI vesicle coat | |
| GO:0030126 | IEA | InterPro | COPI vesicle coat | |
| GO:0005794 | IEA | GOA Database | Golgi apparatus | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0000139 | IEA | GOA Database | Golgi membrane | |
| GO:0030663 | IEA | GOA Database | COPI-coated vesicle membrane | |
| GO:0016020 | IEA | GOA Database | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR006692 | Coatomer, WD associated region |
| IPR001680 | WD40 repeat |
| IPR010714 | Coatomer, alpha subunit, C-terminal |
| IPR036322 | WD40-repeat-containing domain superfamily |
| IPR015943 | WD40/YVTN repeat-like-containing domain superfamily |
| IPR016391 | Coatomer alpha subunit |
| IPR020472 | G-protein beta WD-40 repeat |
| IPR011048 | Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily |
| Mapman id | Description |
|---|---|
| 22.2.1.1.1 | Vesicle trafficking.Golgi-ER retrograde trafficking.Coat protein I (COPI) coatomer machinery.coat protein complex.subunit alpha |