Gene: COL.COLO4_21990

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_21990
  • Transcript Identifier COL.rna20739
  • Gene Type Coding gene
  • Location AWUE01017841.1 : 15085-20596 : negative

Gene Family Information

  • ID HOM05D000140
  • #Genes/#Species 2610/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna20739
  • GenBank OMO84533.1
  • id gene21962
  • gene_name COLO4_21990
  • uniprot A0A1R3IPM5

Descriptions

  • Description hypothetical protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0008152
IEA
GOA Databasemetabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030246
IEA
GOA Databasecarbohydrate binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0004553
IEA
GOA Databasehydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0004565
IEA
GOA Databasebeta-galactosidase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT2G32810
GO:0009505
ISO
PLAZA Integrative Orthologyplant-type cell wall AT3G13750
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT2G32810
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT4G26140
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G13750
GO:0048046
IEA
GOA Databaseapoplast
GO:0005576
IEA
GOA Databaseextracellular region

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000922 D-galactoside/L-rhamnose binding SUEL lectin domain
IPR008979 Galactose-binding-like domain superfamily
IPR031330 Glycoside hydrolase 35, catalytic domain
IPR043159 D-galactoside/L-rhamnose binding SUEL lectin domain superfamily
IPR041392 Beta-galactosidase, beta-sandwich domain
IPR017853 Glycoside hydrolase superfamily
IPR001944 Glycoside hydrolase, family 35
Mapman id Description
21.3.2.2.3 Cell wall organisation.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase (BGAL)