Gene: COL.COLO4_19172

General Information

Structural Information

  • Species Corchorus olitorius
  • Gene Identifier COL.COLO4_19172
  • Transcript Identifier COL.rna17935
  • Gene Type Coding gene
  • Location AWUE01016554.1 : 64732-66861 : positive

Gene Family Information

  • ID HOM05D000377
  • #Genes/#Species 1292/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid rna17935
  • GenBank OMO90418.1
  • id gene19144
  • gene_name COLO4_19172
  • uniprot A0A1R3J6F0

Descriptions

  • Description Zinc finger, CCCH-type
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
ISO
PLAZA Integrative Orthologyregulation of transcription, DNA-templated AT5G58620
GO:0006412
ISO
PLAZA Integrative Orthologytranslation AT5G58620

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0046872
IEA
InterPrometal ion binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT5G58620

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010494
ISO
PLAZA Integrative Orthologycytoplasmic stress granule AT5G58620
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT5G58620

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002110 Ankyrin repeat
IPR000571 Zinc finger, CCCH-type
IPR036770 Ankyrin repeat-containing domain superfamily
IPR041367 E3 ligase, CCCH-type zinc finger
IPR020683 Ankyrin repeat-containing domain
Mapman id Description
16.8.2 RNA processing.mRNA sequestration.mRNA-binding regulatory factor (TZF)