Gene: COL.COLO4_12940
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_12940
- Transcript Identifier COL.rna11729
- Gene Type Coding gene
- Location AWUE01014982.1 : 60708-62898 : negative
Gene Family Information
- ID HOM05D000080
- #Genes/#Species 3730/98
- Phylogenetic origin
- ID ORTHO05D000053
- #Genes/#Species 2731/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid rna11729
- GenBank OMP00089.1
- id gene12912
- gene_name COLO4_12940
- uniprot A0A1R3JZ21
Descriptions
- Description Multicopper oxidase, type 1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046274 | IEA | GOA Database | lignin catabolic process | |
| GO:0046274 | IEA | InterPro | lignin catabolic process | |
| GO:0009809 | ISO | PLAZA Integrative Orthology | lignin biosynthetic process | AT5G60020 |
| GO:0009698 | ISO | PLAZA Integrative Orthology | phenylpropanoid metabolic process | AT5G60020 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0052716 | IEA | GOA Database | hydroquinone:oxygen oxidoreductase activity | |
| GO:0052716 | IEA | InterPro | hydroquinone:oxygen oxidoreductase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016491 | IEA | GOA Database | oxidoreductase activity | |
| GO:0016491 | IEA | InterPro | oxidoreductase activity | |
| GO:0005507 | IEA | GOA Database | copper ion binding | |
| GO:0005507 | IEA | InterPro | copper ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048046 | IEA | GOA Database | apoplast | |
| GO:0048046 | IEA | InterPro | apoplast | |
| GO:0005576 | IEA | GOA Database | extracellular region | |
| GO:0009505 | ISO | PLAZA Integrative Orthology | plant-type cell wall | AT5G60020 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001117 | Multicopper oxidase, type 1 |
| IPR008972 | Cupredoxin |
| IPR011707 | Multicopper oxidase, N-termianl |
| IPR034289 | Laccase, third cupredoxin domain |
| IPR034288 | Laccase, first cupredoxin domain |
| IPR011706 | Multicopper oxidase, C-terminal |
| IPR017761 | Laccase |
| IPR045087 | Multicopper oxidase |
| IPR034285 | Laccase, second cupredoxin domain |
| Mapman id | Description |
|---|---|
| 21.6.2.2 | Cell wall organisation.lignin.monolignol conjugation and polymerization.lignin laccase |