Gene: COL.COLO4_12503
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_12503
- Transcript Identifier COL.rna11293
- Gene Type Coding gene
- Location AWUE01014926.1 : 62142-63198 : positive
Gene Family Information
- ID HOM05D001354
- #Genes/#Species 463/100
- Phylogenetic origin
- ID ORTHO05D002582
- #Genes/#Species 277/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna11293
- GenBank OMP00651.1
- id gene12475
- gene_name COLO4_12503
- uniprot A0A1R3K0Q0
Descriptions
- Description hypothetical protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006614 | IEA | GOA Database | SRP-dependent cotranslational protein targeting to membrane | |
| GO:0006614 | IEA | InterPro | SRP-dependent cotranslational protein targeting to membrane |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005525 | IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003924 | IEA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0008312 | IEA | GOA Database | 7S RNA binding | |
| GO:0008312 | IEA | InterPro | 7S RNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G49500 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0048500 | IEA | GOA Database | signal recognition particle | |
| GO:0048500 | IEA | InterPro | signal recognition particle | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G48900 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR000897 | Signal recognition particle, SRP54 subunit, GTPase domain |
| IPR022941 | Signal recognition particle, SRP54 subunit |
| IPR036891 | Signal recognition particle, SRP54 subunit, M-domain superfamily |
| IPR036225 | SRP/SRP receptor, N-terminal |
| IPR013822 | Signal recognition particle SRP54, helical bundle |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR042101 | Signal recognition particle SRP54, N-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 23.3.1.1.5 | Protein translocation.endoplasmic reticulum.co-translational insertion system.SRP (signal recognition particle) complex.component SRP54 |