Gene: BcaC09g49166

General Information

Structural Information

Species Brassica carinata
Gene Identifier BcaC09g49166
Transcript Identifier BcaC09g49166
Gene Type Coding gene
Location ChrC09 : 14615622-14618056 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000032
#Genes/#Species 5307/100
Phylogenetic origin

ID ORTHO05D004222
#Genes/#Species 187/91
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate
Block Duplication Block duplicate

Labels

Identifiers

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT3G22330
GO:0016070	ISO	PLAZA Integrative Orthology	RNA metabolic process	Solyc12g006320.3
GO:0000373	ISO	PLAZA Integrative Orthology	Group II intron splicing	AT3G22330

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	InterPro	ATP binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT3G22330

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT3G22330
GO:0005618	ISO	PLAZA Integrative Orthology	cell wall	AT3G22330
GO:0032991	ISO	PLAZA Integrative Orthology	protein-containing complex	AT3G22330
GO:0005730	ISO	PLAZA Integrative Orthology	nucleolus	AT3G22330

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR011545	DEAD/DEAH box helicase domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

Mapman id	Description
16.11.4.2.1.4	RNA processing.organelle machinery.pre-mRNA splicing.mitochondrial RNA splicing.group-II intron splicing.RNA helicase (PMH)