Gene: BcaB05g22342

General Information

Structural Information

Species Brassica carinata
Gene Identifier BcaB05g22342
Transcript Identifier BcaB05g22342
Gene Type Coding gene
Location ChrB05 : 7151094-7153791 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000809
#Genes/#Species 730/100
Phylogenetic origin

ID ORTHO05D001196
#Genes/#Species 459/95
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0010048	IEA	InterPro	vernalization response
GO:0040029	IEA	InterPro	regulation of gene expression, epigenetic
GO:0009409	ISO	PLAZA Integrative Orthology	response to cold	AT5G57380
GO:0045814	ISO	PLAZA Integrative Orthology	negative regulation of gene expression, epigenetic	AT5G57380
GO:0001666	ISO	PLAZA Integrative Orthology	response to hypoxia	AT5G57380
GO:0061087	ISO	PLAZA Integrative Orthology	positive regulation of histone H3-K27 methylation	AT5G57380
GO:0051571	ISO	PLAZA Integrative Orthology	positive regulation of histone H3-K4 methylation	AT5G57380
GO:0070417	ISO	PLAZA Integrative Orthology	cellular response to cold	AT5G57380

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G57380

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT5G57380
GO:0016607	ISO	PLAZA Integrative Orthology	nuclear speck	AT5G57380
GO:0005677	ISO	PLAZA Integrative Orthology	chromatin silencing complex	AT5G57380

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR044514	Vernalization insensitive 3-like
IPR032881	Oberon, PHD finger domain

Mapman id	Description
12.3.3.2.1.2.2	Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.associated protein factors.PRC2-VRN-interacting factor (VIN3/VEL)