Gene: AagrBONN_evm.TU.Sc2ySwM_117.3048

General Information

Structural Information

  • Species Anthoceros agrestis
  • Gene Identifier AagrBONN_evm.TU.Sc2ySwM_117.3048
  • Transcript Identifier AagrBONN_evm.model.Sc2ySwM_117.3048.1
  • Gene Type Coding gene
  • Location Sc2ySwM_117 : 12477797-12478744 : negative

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name AagrBONN_EVM_Sc2ySwM_117.3048

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006406
ISO
PLAZA Integrative OrthologymRNA export from nucleus AT2G21660
GO:0016554
ISO
PLAZA Integrative Orthologycytidine to uridine editing AT1G73530
GO:0006970
ISO
PLAZA Integrative Orthologyresponse to osmotic stress AT3G23830
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT2G21660
GO:0007623
ISO
PLAZA Integrative Orthologycircadian rhythm AT2G21660
GO:1900864
ISO
PLAZA Integrative Orthologymitochondrial RNA modification AT3G23830
GO:0000380
ISO
PLAZA Integrative Orthologyalternative mRNA splicing, via spliceosome AT2G21660
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT2G21660
GO:0010501
ISO
PLAZA Integrative OrthologyRNA secondary structure unwinding AT2G21660
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT2G21660
GO:0009414
ISO
PLAZA Integrative Orthologyresponse to water deprivation AT3G23830
GO:0010043
ISO
PLAZA Integrative Orthologyresponse to zinc ion AT2G21660
GO:0009651
ISO
PLAZA Integrative Orthologyresponse to salt stress AT3G23830
GO:1901002
ISO
PLAZA Integrative Orthologypositive regulation of response to salt stress AT5G06210
GO:0080156
ISO
PLAZA Integrative Orthologymitochondrial mRNA modification AT1G74230
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification AT1G73530
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G23830
GO:0010119
ISO
PLAZA Integrative Orthologyregulation of stomatal movement AT2G21660
GO:0032508
ISO
PLAZA Integrative OrthologyDNA duplex unwinding AT2G21660

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G73530
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G74230
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G73530
GO:0003690
ISO
PLAZA Integrative Orthologydouble-stranded DNA binding AT3G23830
GO:0043621
ISO
PLAZA Integrative Orthologyprotein self-association AT1G74230
GO:0003697
ISO
PLAZA Integrative Orthologysingle-stranded DNA binding AT1G74230
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
ISO
PLAZA Integrative OrthologyATP binding AT1G74230
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT1G74230
GO:0005507
ISO
PLAZA Integrative Orthologycopper ion binding AT1G74230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G21660
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT2G21660
GO:0005777
ISO
PLAZA Integrative Orthologyperoxisome AT2G21660
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT2G21660
GO:0005739
ISO
PLAZA Integrative Orthologymitochondrion AT1G74230
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT1G73530
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G21660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)