Gene: ATR0626G230
General Information
Structural Information
- Species Amborella trichopoda
- Gene Identifier ATR0626G230
- Transcript Identifier ATR0626G230.1
- Gene Type Coding gene
- Location AmTr_v1.0_scaffold00025 : 6136348-6139378 : positive
Gene Family Information
- ID HOM05D001257
- #Genes/#Species 497/99
- Phylogenetic origin
- ID ORTHO05D009836
- #Genes/#Species 89/63
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id evm_27.TU.AmTr_v1.0_scaffold00025.401.v1.0
- pacid 31566393
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006352 | IEA | InterPro | DNA-templated transcription, initiation | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0071482 | ISO | PLAZA Integrative Orthology | cellular response to light stimulus | AT5G13730 |
| GO:2001141 | ISO | PLAZA Integrative Orthology | regulation of RNA biosynthetic process | AT5G13730 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0016987 | ISO | PLAZA Integrative Orthology | sigma factor activity | AT5G13730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR013324 | RNA polymerase sigma factor, region 3/4-like |
| IPR014284 | RNA polymerase sigma-70 like domain |
| IPR000943 | RNA polymerase sigma-70 |
| IPR007624 | RNA polymerase sigma-70 region 3 |
| IPR007627 | RNA polymerase sigma-70 region 2 |
| IPR007630 | RNA polymerase sigma-70 region 4 |
| IPR013325 | RNA polymerase sigma factor, region 2 |
| Mapman id | Description |
|---|---|
| 15.6.2.1 | RNA biosynthesis.organelle machinery.transcriptional regulation.basal transcription factor (Sigma) |