Gene: AT5G65310
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G65310
- Transcript Identifier AT5G65310.1
- Gene Type Coding gene
- Location Chr5 : 26102457-26104217 : negative
Gene Family Information
- ID HOM05D000183
- #Genes/#Species 2094/97
- Phylogenetic origin
- ID ORTHO05D000100
- #Genes/#Species 2114/97
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G65310.1
- symbol HB5
- Alias ATHB-5,ATHB5,homeobox protein 5
- uniprot P46667
Descriptions
- Description homeobox protein 5
- Computational description homeobox protein 5 (HB5); FUNCTIONS IN: sequence-specific DNA binding, transcription activator activity, protein homodimerization activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: positive regulation of transcription, abscisic acid mediated signaling pathway, regulation of abscisic acid mediated signaling pathway, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Helix-turn-helix motif, lambda-like repressor (InterPro:IPR000047), Homeodomain-like (InterPro:IPR009057), Leucine zipper, homeobox-associated (InterPro:IPR003106), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox protein 16 (TAIR:AT4G40060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006355 | IEA | GOA Database | regulation of transcription, DNA-templated | |
GO:0006355 | ISS | Gene Ontology | regulation of transcription, DNA-templated | 1 |
GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
GO:0006357 | IEA | GOA Database | regulation of transcription by RNA polymerase II | |
GO:0045893 | IDA IBA | Gene Ontology | positive regulation of transcription, DNA-templated | 2 3 |
GO:0009738 | TAS | Gene Ontology | abscisic acid-activated signaling pathway | 4 |
GO:0009737 | IDA, IMP | Gene Ontology | response to abscisic acid | 4 |
GO:0009787 | NAS | Gene Ontology | regulation of abscisic acid-activated signaling pathway |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000976 | IPI | Gene Ontology | transcription cis-regulatory region binding | 5 |
GO:0043565 | IDA IBA IEA | Gene Ontology | sequence-specific DNA binding | 3 6 |
GO:0043565 | IEA | InterPro | sequence-specific DNA binding | |
GO:0003677 | IEA | GOA Database | DNA binding | |
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0000981 | IEA | Gene Ontology | DNA-binding transcription factor activity, RNA polymerase II-specific | |
GO:0003700 | ISS TAS | Gene Ontology | DNA-binding transcription factor activity | 4 7 |
GO:0042803 | IDA | Gene Ontology | protein homodimerization activity | 6 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | ISM, IBA | Gene Ontology | nucleus | 3 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
15.5.3.1 | RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) |