Gene: AT5G62910

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G62910
  • Transcript Identifier AT5G62910.1
  • Gene Type Coding gene
  • Location Chr5 : 25250830-25252015 : positive

Gene Family Information

  • ID HOM05D002552
  • #Genes/#Species 266/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G62910.1
  • uniprot Q9FM05

Descriptions

  • Description RING/U-box superfamily protein
  • Computational description RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G48070.2); Has 749 Blast hits to 665 proteins in 188 species: Archae - 0; Bacteria - 6; Metazoa - 241; Fungi - 216; Plants - 135; Viruses - 4; Other Eukaryotes - 147 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IBA
Gene Ontologyprotein ubiquitination1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
IEA
GOA Databaseubiquitin-protein transferase activity
GO:0004842
IBA
Gene Ontologyubiquitin-protein transferase activity1
GO:0004842
IEA
InterProubiquitin-protein transferase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0030014
IEA
GOA DatabaseCCR4-NOT complex
GO:0030014
IBA
Gene OntologyCCR4-NOT complex1
GO:0030014
IEA
InterProCCR4-NOT complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039515 NOT4, modified RING finger, HC subclass (C4C4-type)
IPR039780 CCR4-NOT transcription complex subunit 4
IPR013083 Zinc finger, RING/FYVE/PHD-type
Mapman id Description
19.2.2.1.4.3.1 Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.ubiquitin conjugation (ubiquitylation).ubiquitin-ligase E3 activities.RING-domain E3 ligase activities.RING-C2-class E3 ligase