Gene: AT5G61130
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G61130
- Transcript Identifier AT5G61130.1
- Gene Type Coding gene
- Location Chr5 : 24587438-24589369 : negative
Gene Family Information
- ID HOM05D000020
- #Genes/#Species 6649/98
- Phylogenetic origin
- ID ORTHO05D000156
- #Genes/#Species 1605/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G61130.1
- symbol PDCB1
- Alias AtPDCB1
- uniprot Q9FNQ2
Descriptions
- Description plasmodesmata callose-binding protein 1
- Computational description plasmodesmata callose-binding protein 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 2214 Blast hits to 2014 proteins in 207 species: Archae - 0; Bacteria - 106; Metazoa - 136; Fungi - 241; Plants - 1436; Viruses - 12; Other Eukaryotes - 283 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | ISO | PLAZA Homology (enrichment) | carbohydrate metabolic process | HOM05D000020 |
| GO:0052543 | IMP | Gene Ontology | callose deposition in cell wall | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004553 | ISO | PLAZA Homology (enrichment) | hydrolase activity, hydrolyzing O-glycosyl compounds | HOM05D000020 |
| GO:0030247 | IDA | Gene Ontology | polysaccharide binding | 1 |
| GO:0001872 | IDA | Gene Ontology | (1->3)-beta-D-glucan binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009506 | IEA | GOA Database | plasmodesma | |
| GO:0009506 | IDA | Gene Ontology | plasmodesma | 1 |
| GO:0031225 | IEA | GOA Database | anchored component of membrane | |
| GO:0031225 | TAS | Gene Ontology | anchored component of membrane | 2 |
| GO:0030054 | IEA | GOA Database | cell junction | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0009505 | IDA | GOA Database | plant-type cell wall | |
| GO:0009505 | HDA | Gene Ontology | plant-type cell wall | 3 |
| GO:0005886 | IDA IEA | GOA Database | plasma membrane | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0009536 | HDA | Gene Ontology | plastid | 4 |
| GO:0046658 | HDA | Gene Ontology | anchored component of plasma membrane | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |