Gene: AT5G59970
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G59970
- Transcript Identifier AT5G59970.1
- Gene Type Coding gene
- Location Chr5 : 24146352-24146663 : negative
Gene Family Information
- ID HOM05D000283
- #Genes/#Species 1540/100
- Phylogenetic origin
- ID ORTHO05D000358
- #Genes/#Species 1061/97
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G59970.1
- uniprot Q6NR90
Descriptions
- Description Histone superfamily protein
- Computational description Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Histone H4, conserved site (InterPro:IPR019809), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125), Histone H4 (InterPro:IPR001951); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G59690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009414 | ISO | PLAZA Integrative Orthology | response to water deprivation | AT1G07660 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046982 | IEA | Gene Ontology | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009579 | ISO | PLAZA Integrative Orthology | thylakoid | AT1G07660 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT1G07660 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT1G07660 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G07660 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT1G07660 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT1G07660 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT1G07660 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0005694 | IEA | GOA Database | chromosome | |
| GO:0009536 | HDA | Gene Ontology | plastid | 2 |
| GO:0005794 | RCA | Gene Ontology | Golgi apparatus | 3 |
| GO:0005829 | RCA | Gene Ontology | cytosol | 4 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 5 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.4 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H4) |