Gene: AT5G58500
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G58500
- Transcript Identifier AT5G58500.1
- Gene Type Coding gene
- Location Chr5 : 23645535-23646083 : negative
Gene Family Information
- ID HOM05D000378
- #Genes/#Species 1291/95
- Phylogenetic origin
- ID ORTHO05D000256
- #Genes/#Species 1259/95
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G58500.1
- symbol LSH5
- full_name LIGHT SENSITIVE HYPOCOTYLS 5
- uniprot Q9FGH2
Descriptions
- Description LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)
- Computational description LIGHT SENSITIVE HYPOCOTYLS 5 (LSH5); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G07090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009299 | ISS, IBA | Gene Ontology | mRNA transcription | 1 |
| GO:0090698 | ISS | Gene Ontology | post-embryonic plant morphogenesis | |
| GO:0009416 | IBA | Gene Ontology | response to light stimulus | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISS, IBA | Gene Ontology | nucleus | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |