Gene: AT5G57560

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G57560
  • Transcript Identifier AT5G57560.1
  • Gene Type Coding gene
  • Location Chr5 : 23307296-23308235 : negative

Gene Family Information

  • ID HOM05D000066
  • #Genes/#Species 3967/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G57560.1
  • symbol TCH4
  • Alias XTH22,xyloglucan endotransglucosylase/hydrolase 22
  • full_name Touch 4
  • uniprot Q38857

Descriptions

  • Description Xyloglucan endotransglucosylase/hydrolase family protein
  • Computational description Touch 4 (TCH4); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglycosylase 6 (TAIR:AT4G25810.1); Has 2219 Blast hits to 2201 proteins in 305 species: Archae - 0; Bacteria - 284; Metazoa - 0; Fungi - 458; Plants - 1386; Viruses - 0; Other Eukaryotes - 91 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006073
IEA
GOA Databasecellular glucan metabolic process
GO:0006073
IEA
InterProcellular glucan metabolic process
GO:0071555
IEA
GOA Databasecell wall organization
GO:0008152
IEA
GOA Databasemetabolic process
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0010411
IEA
Gene Ontologyxyloglucan metabolic process
GO:0010411
IEA
InterProxyloglucan metabolic process
GO:0042546
IEA
Gene Ontologycell wall biogenesis
GO:0042546
IEA
InterProcell wall biogenesis
GO:0071456
HEP
Gene Ontologycellular response to hypoxia1
GO:0009409
IEP
Gene Ontologyresponse to cold2
GO:0009408
IEP
Gene Ontologyresponse to heat3
GO:0009733
IEP
Gene Ontologyresponse to auxin4
GO:0009741
IEP
Gene Ontologyresponse to brassinosteroid4
GO:0009612
IEP
Gene Ontologyresponse to mechanical stimulus5
GO:0009664
TAS
Gene Ontologyplant-type cell wall organization5

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016762
IEA
GOA Databasexyloglucan:xyloglucosyl transferase activity
GO:0016762
IDA
Gene Ontologyxyloglucan:xyloglucosyl transferase activity6
GO:0016762
IEA
InterProxyloglucan:xyloglucosyl transferase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016740
IEA
GOA Databasetransferase activity
GO:0004553
IEA
Gene Ontologyhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0004553
IEA
InterProhydrolase activity, hydrolyzing O-glycosyl compounds

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005794
IDA
GOA DatabaseGolgi apparatus
GO:0005794
HDA
Gene OntologyGolgi apparatus7
GO:0005618
IEA
GOA Databasecell wall
GO:0005618
IDA
Gene Ontologycell wall5
GO:0005618
IEA
InterProcell wall
GO:0048046
IEA
GOA Databaseapoplast
GO:0048046
IEA
InterProapoplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0099503
HDA
Gene Ontologysecretory vesicle8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016455 Xyloglucan endotransglucosylase/hydrolase
IPR044791 Beta-glucanase/XTH
IPR000757 Glycoside hydrolase family 16
IPR010713 Xyloglucan endo-transglycosylase, C-terminal
IPR008264 Beta-glucanase
IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
Mapman id Description
50.2.4 Enzyme classification.EC_2 transferases.EC_2.4 glycosyltransferase