Gene: AT5G55400
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G55400
- Transcript Identifier AT5G55400.2
- Gene Type Coding gene
- Location Chr5 : 22455535-22458950 : negative
Gene Family Information
- ID HOM05D001236
- #Genes/#Species 503/99
- Phylogenetic origin
- ID ORTHO05D001090
- #Genes/#Species 492/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G55400.2
- uniprot Q9FJ70
Descriptions
- Description Actin binding Calponin homology (CH) domain-containing protein
- Computational description Actin binding Calponin homology (CH) domain-containing protein; FUNCTIONS IN: actin binding; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Actinin-type, actin-binding, conserved site (InterPro:IPR001589), Calponin-homology (InterPro:IPR016146), Calponin-like actin-binding (InterPro:IPR001715); BEST Arabidopsis thaliana protein match is: fimbrin 1 (TAIR:AT4G26700.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051017 | IEA | GOA Database | actin filament bundle assembly | |
| GO:0051017 | IDA IBA | Gene Ontology | actin filament bundle assembly | 1 2 |
| GO:0051017 | IEA | InterPro | actin filament bundle assembly | |
| GO:0051639 | IDA IBA | Gene Ontology | actin filament network formation | 1 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0051015 | IEA | GOA Database | actin filament binding | |
| GO:0051015 | IBA | Gene Ontology | actin filament binding | 1 |
| GO:0051015 | IEA | InterPro | actin filament binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003779 | IEA | GOA Database | actin binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005856 | IEA | GOA Database | cytoskeleton | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM, IBA | Gene Ontology | cytoplasm | 1 |
| GO:0005773 | IDA | GOA Database | vacuole | |
| GO:0032432 | IBA | Gene Ontology | actin filament bundle | 1 |
| GO:0005884 | IBA | Gene Ontology | actin filament | 1 |
| GO:0000325 | HDA | Gene Ontology | plant-type vacuole | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 20.2.2.4 | Cytoskeleton organisation.microfilament network.actin polymerisation.fimbrin actin-crosslinking factor |