Gene: AT5G54230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G54230
  • Transcript Identifier AT5G54230.1
  • Gene Type Coding gene
  • Location Chr5 : 22016357-22017845 : negative

Gene Family Information

  • ID HOM05D000008
  • #Genes/#Species 9932/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G54230.1
  • symbol MYB49
  • Alias AtMYB49,myb domain protein 49
  • uniprot Q9SPG6

Descriptions

  • Description myb domain protein 49
  • Computational description myb domain protein 49 (MYB49); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: MYB-like 102 (TAIR:AT4G21440.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
TAS
Gene Ontologyregulation of transcription, DNA-templated1
GO:0006876
IMP
Gene Ontologycellular cadmium ion homeostasis2
GO:0010628
IDA
Gene Ontologypositive regulation of gene expression2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003700
IDA
ISS
Gene OntologyDNA-binding transcription factor activity1 2
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding3
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0043565
IDA, IPI
Gene Ontologysequence-specific DNA binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001005 SANT/Myb domain
IPR017930 Myb domain
IPR009057 Homeobox-like domain superfamily
Mapman id Description
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB)