Gene: AT5G53530
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G53530
- Transcript Identifier AT5G53530.1
- Gene Type Coding gene
- Location Chr5 : 21746275-21748156 : negative
Gene Family Information
- ID HOM05D003194
- #Genes/#Species 214/99
- Phylogenetic origin
- ID ORTHO05D003790
- #Genes/#Species 205/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G53530.1
- symbol VPS26A
- uniprot Q9FJD0
Descriptions
- Description vacuolar protein sorting 26A
- Computational description vacuolar protein sorting 26A (VPS26A); CONTAINS InterPro DOMAIN/s: Vacuolar protein sorting-associated protein 26 (InterPro:IPR005377); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting 26B (TAIR:AT4G27690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006886 | IEA | GOA Database | intracellular protein transport | |
| GO:0006886 | IBA | Gene Ontology | intracellular protein transport | 1 |
| GO:0006886 | IEA | InterPro | intracellular protein transport | |
| GO:0015031 | IEA | GOA Database | protein transport | |
| GO:0042147 | IBA | Gene Ontology | retrograde transport, endosome to Golgi | 1 |
| GO:0008333 | ISS | Gene Ontology | endosome to lysosome transport | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005768 | IEA | GOA Database | endosome | |
| GO:0005768 | IBA | Gene Ontology | endosome | 1 |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IDA | Gene Ontology | membrane | 2 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0010008 | IEA | GOA Database | endosome membrane | |
| GO:0005794 | IEA | GOA Database | Golgi apparatus | |
| GO:0005829 | IEA | GOA Database | cytosol | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0030904 | IDA ISS, IBA | Gene Ontology | retromer complex | 1 2 |
| GO:0043231 | IDA | Gene Ontology | intracellular membrane-bounded organelle | 2 |
| GO:0005771 | IDA | Gene Ontology | multivesicular body | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 22.4.2.1.3 | Vesicle trafficking.endocytic trafficking.Retromer-mediated protein recycling.Retromer complex.component VPS26 |